Ten years of open source engineering,
in the US and Europe.

I write the software, deploy the platform it runs on, and administer the systems underneath. Nearly all of it is public.

Based
France, independent since 2025
Code
github.com/almahmoud
Rate
€125 / $150 an hour
Less for academic, non-profit and open source work

Open source core teams

  • Active member

    Elixir Ireland and GDI

    Lead engineer, Irish node. 2025–

  • Active member

    Bioconductor

    Core engineer. Cloud Working Group lead. 2021–

  • Alumnus

    Galaxy Project

    Core team. Kubernetes and Helm. 2018–2021

  • Alumnus

    NHGRI AnVIL

    Core team. Terra on GCP and Azure. 2019–2025

What I do

Most engagements are two or three of these at once. That is usually why one person makes more sense than an agency and a hosting company.

  • Full-stack web development

    Interface and user experience, the back end behind it, the database it reads from, and the pipeline that ships changes. One person across the whole stack, so the screen and the query feeding it change together.

  • Research software engineering

    Code that works on one person's machine, turned into something your group can install, test and rely on long after its author has moved on.

  • Platforms on Kubernetes

    Galaxy, RStudio, Jupyter, Keycloak or your own application, running on the cloud you are funded for, scaling with demand and costing little when nobody is using it.

  • Hosting and systems administration

    I keep it running so you do not have to hire someone who does. Servers, clusters, storage, DNS, certificates, backups and the cloud bill, with the exit written down from the start.

  • Modernisation

    Off the server nobody wants to touch and onto infrastructure described in a repository, so the next rebuild takes an afternoon instead of a fortnight.

Almost everything I have built in the last decade is public, and most of it is still running somewhere.

  • bioc2u

    Bioconductor

    Thousands of R packages installable on Ubuntu with apt.

    Creator and maintainer

  • Workshop Platform

    Bioconductor

    On-demand RStudio and Jupyter environments for a few hundred people at a time. workshop.bioconductor.org

    Creator and maintainer

  • CVMFS-CSI Helm chart

    Galaxy, upstream to CERN

    Read-only reference data mounted into Kubernetes pods.

    Primary developer

  • Bioconductor Helm chart

    Bioconductor

    A deployment stack, tested across several clouds on every change.

    Creator and maintainer

  • Galaxy Helm chart

    Galaxy

    The standard way to deploy a production Galaxy server. Published in Bioinformatics.

    Co-author

8 peer‑reviewed papers  ·  12 conference talks

Get in touch

Write me a paragraph about what you are trying to build, or what you need kept running. That is enough to start, and scoping it costs nothing.

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Within two working days

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